NotationBasics: States & KineticsBasics: Mass-Action KineticsEquilibrium means Detailed BalanceCycles and ConstraintsCycle LogicAdvanced Cycle Logic
Non-equilibrium: Steady StatesFree Energy is the Energy Available for WorkThermodynamic Connection Between Free Energy and WorkChemical Potential
Underpinnings of Mass Action: The Ideal Gas The Ideal Gas in a Field: Transmembrane Ionic Gradients Conformational Statistical Mechanics
Binding: Kinetics & ThermodynamicsBinding: Allostery (in a transport cycle)Chemical Reactions: CatalysisReaction Coupling
Energy Storage in Metastable ConditionsSimple Concentration Gradient Across a BilayerIonic Concentration Gradient Across a BilayerATP and other activated carriers
Activated CarriersATP: The Great CarrierATP/Motor Thought ExperimentRecycling of ATP and Coupling to Cellular ProcessesEnergy Storage in GradientsSynthesis of ATP by ATP synthase
ChannelsPumps and TransportersSymporters (Co-transporters)Antiporters (Exchanger or Counter-transporter)ATP-driven TransportersStoichiometric Effects in Transport
Molecular MotorsChaperone-aided Protein FoldingPrinciples of SynthesisPhosphorylation, methylation, etcSynthesis of ATP by ATP SynthaseAdvanced Cycle Logic The Ribosome and Error Correction
Signalling Transport The Membrane, Ions, and "Electrostatic Health" Active ("kinetic") proofreading
